I switch between my mac and ubuntu for work and I access my image data from a server.
I thought the default directory was the same as where the file is located? The new bioformats is again saving files to that directory. So maybe memoizer was previously working using that default directory. I see a line that says "deleting invalid memo file: /Users/franklin/Documents/MATLAB/.".
Not sure why it wasn't working before though. I downloaded 5.9.2 and now things are starting to work! I'm seeing what looks like proper debugging output. I noticed my bioformats wasn't the current version (despite bfupgrade check telling me I was up to date.). Wavelet Toolbox Version 4.19 (R2017b) jmfrank Posts: 4 Joined: Sun 2:08 am Symbolic Math Toolbox Version 8.0 (R2017b) Statistics and Machine Learning Toolbox Version 11.2 (R2017b) Signal Processing Toolbox Version 7.5 (R2017b) Parallel Computing Toolbox Version 6.11 (R2017b) Optimization Toolbox Version 8.0 (R2017b) Instrument Control Toolbox Version 3.12 (R2017b) Image Processing Toolbox Version 10.1 (R2017b) GUI Layout Toolbox Version 2.3.2 (R2018a) Java Version: Java 1.8.0_121-b13 with Oracle Corporation Java HotSpot(TM) 64-Bit Server VM mixed modeĬomputer Vision System Toolbox Version 8.0 (R2017b)Ĭontrol System Toolbox Version 10.3 (R2017b)Ĭurve Fitting Toolbox Version 3.5.6 (R2017b) Operating System: Mac OS X Version: 10.13.5 Build: 17F77
The output in MATLAB from calling ver is: Now that I think about it, I suppose the memoizer works using logging? I'm new to using Java so excuse my lack of understanding. Log4j:WARN Please initialize the log4j system properly.Īre these warnings indicating something critical to the memoizer isn't working? Everything else in my bioformats works fine, so I had ignored these errors until now. Log4j:WARN No appenders could be found for logger (). I think the warnings go away after one call to bioformats. Maybe there's something wrong with the logger? I do see inconsistent warnings about initializing the log4j properly. The only output from the lines you gave me is: I still don't see a memofile in the current directory.
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